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New technologies for protein analysis
STFC KITE Club
New technologies for protein analysis
One Great George Street, London
Wednesday 10th December 2008
Introduction
The genomic revolution resulted in the generation of whole DNA sequences of
many organisms - from simple viruses to humans. Although genomics promised to
open up new avenues of research, including novel pharmaceuticals and gene
therapies, it is clear that this was only the first step. Whilst genomics
results in a sequence of DNA, proteomics is the functional analysis of the
structures encoded by these sequences. Much progress has been made in the field
of protein analysis over the past few years, although the area is expanding,
with more work to be done.
This meeting sought to investigate the current limitations in the field of
instrumentation and data processing for proteomics, introduce STFC technologies
to the life science community and broker new research partnerships. The
workshop was held in collaboration with the Sensors & Instrumentation
KTN.
Morning presentations detailed the needs of the biological community from
three perspectives. Rob Beynon of Liverpool University opened the session with
a presentation, breaking the instrumentation needs of the community down into
three categories - the separation of biomolecules, analytical systems and
bioinformatics. The latter topic was then discussed in more detail by Sarah
Hunter of the Cambridge-based European Bioinformatics Institute, covering: the
storage and back up, data movement, the analysis and interpretation of data,
and user-access of data. In the final talk, Martin Welch of Cambridge
University gave his perception of the technology constraints his laboratory
faces. The rest of the day was taken up with presentations of technologies;
from the use of Bayes Theorem to predict tertiary protein structure, to the
combination of CERN and ESA technologies to produce a new multi-channel
detector for high content imaging.
The workshop was oversubscribed, with 55 people attending on the day.
Programme
|
Time
|
Programme
|
Speaker
|
| 10:00 - 10:30 |
Registration and coffee |
| 10:30 - 10:40 |
Welcome and introduction to STFC |
Penny
Woodman (PDF - 1035kB - link opens in a new window), STFC |
| 10:40 - 10:50 |
The Sensors & Instrumentation KTN |
Robin Higgons (PDF - 3541kB - link opens in a new window), SIKTN |
|
Needs of the Biological Community
|
| 10:50 - 11:10 |
Needs of the biological community |
Rob Beynon, University of Liverpool |
| 11:10 - 11:30 |
Bioinformatics and the big data era |
Sarah
Hunter (PDF - 5359kB - link opens in a new window), EBI |
| 11:30 - 11:50 |
Small bugs, big problems; proteomic analysis of microbial systems |
Martin
Welch (PDF - 6797kB - link opens in a new window), University of Cambridge |
| 11:50 - 12:10 |
Coffee |
|
Technologies for Knowledge Transfer
|
| 12:10 - 12:30 |
Prediction of protein folding |
Farhan Feroz (PDF - 2341kB - link opens in a new window),
University of Cambridge |
| 12:30 - 12:50 |
3D data capture for studying dynamical processes |
Alan Greenaway (PDF - 7428kB - link opens in a new window),
Herriot Watt University |
| 12:50 - 13:10 |
New digital image metrics as the basis for deepening protein
analysis |
Sabine
McNeill (PDF - 4825kB - link opens in a new window), 3D Metrics |
| 13:10 - 14:10 |
Lunch and posters |
| 14:10 - 14:25 |
Funding for collaborative projects |
Mark Littlewood (PDF - 796kB - link opens in a new window), STFC |
|
Case studies
|
| 14:25 - 14:45 |
New detector based on microchannel plate |
Jon
Lapington (PDF - 8412kB - link opens in a new window), University of Leicester |
| 14:45 - 15:05 |
Opportunities at Diamond Light Source |
Gwyndaf Evans (PDF - 12418kB - link opens in a new window), Diamond Light Source |
| 15:05 - 15:25 |
Bayesian modelling in Systems Biology |
Darren Wilkinson (PDF - 2602kB - link opens in a new window),
University of Newcastle |
| 15:25 - 15:45 |
Modelling of microtuble dynamics |
Bernard Piettespan (PDF - 841kB - link opens in a new window),
University of Durham |
| 15:45 - 16:30 |
Close, tea and networking |
Page last updated: 08 December 2009
by Angela Pottinger